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SUMMARY:PIC (BIT1) modelling of the fusion plasma edge
DESCRIPTION:Register here\n\n\n\n\n\n\n\n\nAbout this workshop\n\n\n\nWe invite you at the BIT1 modelling of the fusion plasma edge will take place in Prague\, Czech Republic\, from Monday 7th to Wednesday 9th April 2025. The meeting is organized by the Plasma-PEPSC CoE in collaboration with IPP CAS\, LECAD\, ENCCS and Slovenian and Czech NCCs.  \n\n\n\nBIT1 is an electrostatic Particle in Cell (PIC) Monte Carlo (MC) code optimized for plasma edge modelling. It is 1D in usual and 3D in velocity space. The code is capable of simulating large scale systems with finest resolution in time and space. \n\n\n\nDuring the meeting we 1) introduce the BIT1 code; 2) explain its modelling capabilities; 3) perform training sessions for users of different level; 4) consider examples of other PIC and MC codes; 5) discuss future developments related to exascale and multi-dimensional versions of the code (BIT2\,3) .  \n\n\n\nThe meeting is addressed to plasma edge specialists\, PhD/Master students\, industry engineers\, who want to learn (or improve their knowledge in) PIC modeling of the plasma edge and satisfy the prerequisites. \n\n\n\nPrerequisites\n\n\n\n•    Basic familiarity with plasma physics•    Basic familiarity with Unix shell•    Basic familiarity with HPC environment is helpful but not mandatory \n\n\n\nThe format of the conference will be hybrid\, i.e. remote partecipations will be accepted too. \n\n\n\nFor optimal use of the meeting time the participants can provide in advance the details of the 1D system they want to simulate (tskhakaya@ipp.cas.cz).  \n\n\n\nConference venue\n\n\n\nThe conference is organized at the Institute of Plasma Physics of the Czech Academy of Sciences (IPP CAS)\, U Slovanky 1a\, 18200 Prague. \n\n\n\nMore events & contact\n\n\n\nCheck out more upcoming events from ENCCS and our European network at https://enccs.se/events. \n\n\n\nFor questions regarding this workshop or general questions about ENNCS training events\, please contact training@enccs.se \n\n\n\n\n\n\n\nRegulations\n\n\n\nDue to EuroCC2 regulations\, we CAN NOT ACCEPT generic or private email addresses. Please use your official university or company email address for registration. \n\n\n\nThis training is for users who live and work in the European Union or a country associated with Horizon 2020. You can read more about the countries associated with Horizon2020 HERE.
URL:https://enccs.se/events/pic-bit1-modelling-of-the-fusion-plasma-edge/
CATEGORIES:ENCCS Event
ATTACH;FMTTYPE=image/webp:https://media.enccs.se/2025/03/plasma-pepsc_workshop.webp
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DTSTART;TZID=Europe/Stockholm:20250408T090000
DTEND;TZID=Europe/Stockholm:20250409T123000
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CREATED:20250213T153335Z
LAST-MODIFIED:20250306T104947Z
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SUMMARY:Bootcamp: N-Ways to GPU Programming
DESCRIPTION:Register here\n\n\n\n\n\n\n\n\n\n\n\n\nDuring this two-day online Bootcamp\, four different GPU programming models will be introduced and participants will be able to choose the one that best fits their needs to run their scientific codes on GPUs. This Bootcamp will cover an introduction to GPU programming using OpenACC\, OpenMP\, stdpar and CUDA\, and will provide hands-on opportunities to learn how to analyse GPU-enabled applications using NVIDIA® Nsight™ Systems. This online Bootcamp is a hands-on learning experience where you will be guided through step-by-step instructions with teaching assistants on hand to help throughout. \n\n\n\nThe Bootcamp is co-organised by HLRS\, JSC\, LRZ\, VSC Vienna\, Cyfronet AGH\, IT4Innovations\, RISE\, LiU\, OpenACC.org and NVIDIA for EuroCC Austria\, EuroCC Czechia\, EuroCC Poland\, EuroCC Montenegro\, SLING\, EuroCC@GCS and EuroCC Sweden\, all National Competence Centres for High-Performance Computing. \n\n\n\nRegistration closes on March 10\, 2025 at 23:55. \n\n\n\nYou will be informed until March 24\, 2025 about your acceptance for the bootcamp. \n\n\n\nPrerequisites and content levels\n\n\n\nPrerequisites \n\n\n\nBasic experience with C/C++ or Fortran. No GPU programming knowledge is required. \n\n\n\nContent levels \n\n\n\nBeginners level: 9 hours \n\n\n\nInstructors\n\n\n\nMain lecturers: Paul Graham (NVIDIA) \n\n\n\nEvent moderator: Claudia Blaas-Schenner (VSC Research Center\, TU Wien and EuroCC-Austria) \n\n\n\nAgenda\n\n\n\nAll times CEST. \n\n\n\n\n\n\n\n	Day 0 (Mon\, Apr 7)Cluster dry run\n\n\n\n\n	14:00-15:00Cluster dry run session\n\n\n	Day 1 (Tue\, Apr 8)Introduction\n\n\n	08:45-09:00Join in\n\n\n	09:00-09:15Welcome (Moderator)\n\n\n	09:15-09:45Introduction to GPU computing (Lecture)\n\n\n	09:45-10:15Introduction to Nsight Systems (Lecture and Read only Lab\n\n\n	10:15-11:15Accelerating standard C++ and Fortran with GPUs (Lecture and Lab)\n\n\n	11:15-11:30Break\n\n\n	11:30-13:00Directive-based programming with OpenACC on GPU (Lecture and Lab)\n\n\n	13:00-14:00Lunch\n\n\n	14:00-15:45CUDA C/Fortran Programming (Lecture and Lab)\n\n\n	15:45-16:00Wrap up and Q/A\n\n\n	Day 2 (Wed\, Apr 9)Hands-on labs\n\n\n	08:45-09:00Join in\n\n\n	09:00-12:00Code Challenge (in breakout rooms)\n\n\n	12:00-12:30Q/A about code challenge\n\n\n	12:30-13:00Project discussion (Optional)\n\n\n\n\n\n\n\nHands-on sessions\n\n\n\nAttendees will be given access to an A100 GPU on one of the supercomputers of the organizers. \n\n\n\nThe code is publicly available on github. \n\n\n\nSchedules can change!\n\n\n\nTo ensure that everyone has the opportunity to participate\, we kindly request that you let us know as soon as possible if you are unable to attend an event after registering. \n\n\n\nPlease send us an email at training@enccs.se to cancel your attendance. \n\n\n\nWe understand things can change\, but repeated cancellations without notice may unfortunately result in your name being removed from future event registration lists. \n\n\n\n\n\n\n\nRegulations\n\n\n\nDue to EuroCC2 regulations\, we CAN NOT ACCEPT generic or private email addresses. Please use your official university or company email address for registration. \n\n\n\nThis training is for users who live and work in the European Union or a country associated with Horizon 2020. You can read more about the countries associated with Horizon2020 HERE.
URL:https://enccs.se/events/bootcamp-n-days-gpu-programming/
CATEGORIES:ENCCS Event
ATTACH;FMTTYPE=image/png:https://media.enccs.se/2025/02/N-Ways-GPU-2025-04_image-1.png
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DTSTART;TZID=Europe/Stockholm:20250409T090000
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SUMMARY:Exploring Biomolecular Modelling and Simulations
DESCRIPTION:Register here\n\n\n\n\n\n\n\n\nRegistration Deadline: 24 March 2025 \n\n\n\nFormat: Hybrid (on-site & online)  \n\n\n\nPrerequisites:  \n\n\n\n-Experience in a Linux environment\, jupyter notebook\, Python\, Conda\, and BioBB library.  \n\n\n\n-Familiarity with High-Performance Computing (HPC) systems is required for participation in the hands-on sessions. \n\n\n\n-The training is primarily designed for participants from academia (with at least a graduate degree)\, industry\, or public administration who are using or planning to use biomolecular modeling and simulation in their research. \n\n\n\nFor the event programme see the timetable section.  \n\n\n\nThe training consists of four sessions: \n\n\n\n1-) Integrative modeling of biomolecular complexes with HADDOCK \n\n\n\nTools\, libraries\, and applications used: \n\n\n\nHADDOCK3: https://github.com/haddocking/haddock3 \n\n\n\nHADDOCK web server: https://wenmr.science.uu.nl \n\n\n\nHADDOCK tutorials: https://bonvinlab.org/education \n\n\n\nLearning outcomes:  \n\n\n\nGetting insights into the field of integrative modeling and more specifically into HADDOCK. \n\n\n\nGaining hands-on experience in the modeling of biomolecular complexes with HADDOCK \n\n\n\nInstructor: Alexandre M.J.J Bonvin \n\n\n\n2-) Molecular Dynamics Simulations – GROMACS \n\n\n\nTools\, libraries\, and applications used:  \n\n\n\nGROMACS: https://www.gromacs.org/ \n\n\n\nVMD: https://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD \n\n\n\nTutorial: http://www.mdtutorials.com/gmx/index.html\, https://tutorials.gromacs.org/ \n\n\n\nLearning outcomes:  \n\n\n\nUnderstanding the scope of MD simulations and the key considerations before setting up a simulation. \n\n\n\nHands-on experience on MD simulation using GROMACS. \n\n\n\nInstructor: Nandan Haloi\, PhD \n\n\n\n3-) Interoperable and Reproducible Biomolecular Simulation Workflows using BioExcel Building Blocks (BioBB) \n\n\n\nTools\, libraries\, and applications used: Python\, Conda\, and BioBB library. \n\n\n\nInformation about the library\, installation protocols\, and dependencies can be found here: https://mmb.irbbarcelona.org/biobb/; \n\n\n\nAll the tutorials are available here: https://mmb.irbbarcelona.org/biobb/workflows  \n\n\n\nLearning outcomes: Learn how to build FAIR (Findable\, Accessible\, Interoperable\, and Reusable/Reproducible) biomolecular simulation workflows using the BioBB library.  \n\n\n\nInstructor: Adam Hospital  \n\n\n\n4) Fundamentals and Practical Use Cases of Free Energy Calculations with PMX \n\n\n\nTools\, libraries\, and applications used: Conda and GROMACS. \n\n\n\nThe installation protocol and dependencies are documented here (http://pmx.mpibpc.mpg.de/Tutorial2024/Coimbra_2024/ligand_tutorial.html). \n\n\n\nAll the tutorials are available here: http://pmx.mpibpc.mpg.de/tutorial.html \n\n\n\nLearning outcomes:  \n\n\n\n(i) the basics of free energy calculations \n\n\n\n(ii) their use in predicting protein-ligand binding free energies with PMX and GROMACS\, with direct relevance to drug design.   \n\n\n\nInstructor: Sudarshan Behera \n\n\n\nContact:ncc@ulakbim.gov.tr \n\n\n\nNotes: \n\n\n\nParticipants will use their own laptop or computer for the hands-on sessions. \n\n\n\nBefore the training\, participants will receive instructions on how to install the software and configure the environment. \n\n\n\nHybrid format\n\n\n\nThe training consists of lectures and hands-on sessions. All registered participants will be able to follow the lectures; however\, the hands-on sessions will have a limited capacity of 100 people (40 face-to-face particpants and 60 online participants). Based on the registration form\, participants will be selected by considering their experience\, area of research\, and qualifications. Participants should meet the qualification requirements of the hands-on sessions. The acceptance notification will be sent at least 10 days before the event. Selected participants (for the hands-on sessions) will receive a temporary user account for the hands-on training.  \n\n\n\nPlease note that the allocated compute time should only be used for running the hands-on examples and that only limited technical support will be provided to online participants! \n\n\n\nA certificate of attendance will be given only to participants who will follow a minimum of 70% of the whole duration of the course and will be signed in with full name. \n\n\n\n\n\n\n\nRegulations\n\n\n\nDue to EuroCC2 regulations\, we CAN NOT ACCEPT generic or private email addresses. Please use your official university or company email address for registration. \n\n\n\nThis training is for users who live and work in the European Union or a country associated with Horizon 2020. You can read more about the countries associated with Horizon2020 HERE.
URL:https://enccs.se/events/exploring-biomolecular-modelling-and-simulations/
CATEGORIES:ENCCS Event
ATTACH;FMTTYPE=image/png:https://media.enccs.se/2025/03/biomolecular_modelling_seminar.png
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